# channels where you do not want your bot to reply to public queries
set no-pub-seens ""
# channels where you want your bot to send replies via notice to the user and
# not to the channel
set quiet-seens ""
# same as quiet-seens but for AI seen
set quiet-ai-seens ""
# channels where you do not want your bot to log seen data
set no-seendata ""
And also, You should check the settings in DCC/telnet with the bot for each channel. Using: .chaninfo #channel-name
As there are channel options to enable/disable seens that way.